PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ZF-HD
Protein Properties Length: 352aa    MW: 38935 Da    PI: 8.7575
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05969.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1085.3e-3455112359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v Y+eClkNhAa++Ggha+DGCgEfmp +++e +++++lkCaACgCHRnFHRr++ e
    PK05969.1  55 VVSYRECLKNHAANIGGHALDGCGEFMPCPTAEpSDPTSLKCAACGCHRNFHRRDQPE 112
                  689******************************9********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2256109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.4E-2856110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.39958109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2958109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.7E-28218289IPR009057Homeodomain-like
SuperFamilySSF466894.08E-17220288IPR009057Homeodomain-like
TIGRFAMsTIGR015658.6E-26227283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDLSSNPTKT TQDKDTETPP LPQPTRPLSF TNGSLKQQHR HQNHHALTHA PLPTVVSYRE  60
CLKNHAANIG GHALDGCGEF MPCPTAEPSD PTSLKCAACG CHRNFHRRDQ PEEPTSKHFL  120
RSFHNGHPFQ LQPLRLSSQP RQGRSSSPSL SPSPSSSTGP TPSPQSPPPV SHLPPNSYFA  180
SPPQMLLALS TGFSTGPPSD NLPHAHKSFN PTVGVKSSEA TNYSNGKKRF RTKFNQEQKE  240
KMCLFAEKLG WKMQRSEERL IEEFCKEIGV RRGVLKVWMH NNKHTVGKKD RGLSHSNNLG  300
DEASNGDNTN NEGRVLSYDS NQDNEIVDDQ NQNGEDRRAN FNFFANGSSA SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212282851875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895093.11e-101PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLM5XJ801e-88M5XJ80_PRUPE; Uncharacterized protein
TrEMBLW9QW012e-88W9QW01_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-55zinc finger homeodomain 1